PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01013914001
Common NameVIT_16s0013g00970
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 317aa    MW: 35367.3 Da    PI: 5.7096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01013914001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18154204255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrd    ++r  r++lg+f ta eAa+a+++a+ +++g
  GSVIVT01013914001 154 HYRGVRRRP-WGKFAAEIRDA---NRRgSRVWLGTFETAIEAARAYDRAAFEMRG 204
                        8********.**********3...3235*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.90E-30153212No hitNo description
Gene3DG3DSA:3.30.730.102.1E-31153213IPR001471AP2/ERF domain
PROSITE profilePS5103223.67154212IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22154213IPR016177DNA-binding domain
SMARTSM003804.0E-34154218IPR001471AP2/ERF domain
PfamPF008472.5E-14154204IPR001471AP2/ERF domain
PRINTSPR003672.1E-10155166IPR001471AP2/ERF domain
PRINTSPR003672.1E-10178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVPPQIKECI YEPYFFQWKE APFPQPGTSS ETSSLYLRCY AQLSSSLHLI HQLLLSDFQS  60
FENLNDPSQT STSDSSVSTS DVIPLSNYFD LHEDENNPFL LHCSTSAPSG FFQFESKSPK  120
ASRLSRRRPP LSISVSQPTI PQLPADSDSG DVKHYRGVRR RPWGKFAAEI RDANRRGSRV  180
WLGTFETAIE AARAYDRAAF EMRGSKAILN FPLEAGNWSG SDPPAISGPK RERESESEER  240
EQVETKVLKQ EEQSPESDST VAGPTRERDG ENIQAATVNA VITTSLVRIF SAYSLRRGCA  300
LTVIIEFVHS FNNSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-28153213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-28153213464ATERF1
3gcc_A2e-28153213464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.239400.0fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3952070.0FQ395207.1 Vitis vinifera clone SS0AFA17YC17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281871.11e-159PREDICTED: ethylene-responsive transcription factor ERF105
TrEMBLD7U7830.0D7U783_VITVI; Uncharacterized protein
STRINGVIT_16s0013g00970.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-28ethylene responsive element binding factor 5