PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014097001
Common NameLOC100260711, VIT_19s0014g00350
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family DBB
Protein Properties Length: 294aa    MW: 31682.6 Da    PI: 4.8669
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06447542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  GSVIVT01014097001  4 QCNVCEAAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                       7******99*********************66899999999986 PP
2zf-B_box30.76.6e-105290139
           zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkgHtv 39
                       s+++kC+ ++e    +fC +++ llC++C +++H   t+
  GSVIVT01014097001 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVSIHTANTY 90
                       689*********9*********************66333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000215.15E-8347No hitNo description
SMARTSM003361.7E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578451.01E-54594No hitNo description
PROSITE profilePS501199.1295299IPR000315B-box-type zinc finger
SMARTSM003361.1E-155299IPR000315B-box-type zinc finger
PfamPF006431.8E-75393IPR000315B-box-type zinc finger
CDDcd000216.50E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS SSQMPKCDIC  60
QETVGYFFCL EDRALLCRKC DVSIHTANTY VSAHQRFLLT GVKVGLEPTQ PGSSSSMGKS  120
NLVGKHSETE SPSASRRGAP MPLTCDYNKT LSIQAGGAGD FVPTKVSFAG GSGSTESIPQ  180
WHIDELFGLN EFNQTYDCMD NGTSKADIGK LGDSDCSPTL RAADEELNFD DCLGQVPETT  240
WMVPQISSPP TASGLYWPKS SQISSDTSVF VPDICYSPVQ MQNESATKCR RQF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.154570.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3927050.0FQ392705.1 Vitis vinifera clone SS0AFA4YJ07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283666.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-94BBX22_ARATH; B-box zinc finger protein 22
TrEMBLE0CS120.0E0CS12_VITVI; Uncharacterized protein
STRINGVIT_19s0014g00350.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-97light-regulated zinc finger protein 1