PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01014158001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

BES1

Protein Properties

Length: 265aa MW: 29752.3 Da PI: 9.8048

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01014158001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	144.2	1.2e-44	92	171	1	82
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaa 82 ++++r ptwkErEnn rRERrRRaiaaki++ LR++Gnyklpk++DnneVlkALc+ AGw+ve DGttyrk + ++++ GSVIVT01014158001 92 TSGTRLPTWKERENNNRRERRRRAIAAKIFSRLRMYGNYKLPKHCDNNEVLKALCNKAGWTVELDGTTYRKYRADN--SDHG 171 5899******************************************************************876665..4444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	7.61E-5	34	76	No hit	No description
Gene3D	G3DSA:3.30.40.10	4.9E-6	37	72	IPR013083	Zinc finger, RING/FYVE/PHD-type
Pfam	PF05687	1.8E-41	93	165	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEEEVIHHLH HHHHNLNHNH VVHQFLSKPL QNGVVPPATS VHELLECPVC TNSMYPPIHQ 60 CHNGHTLCST CMLGGLEVET VSLWGWWVVG MTSGTRLPTW KERENNNRRE RRRRAIAAKI 120 FSRLRMYGNY KLPKHCDNNE VLKALCNKAG WTVELDGTTY RKYRADNSDH GGETRSPPVP 180 GTRYLGLTTP LAGGNWAGLG MGQIRCIVLL VGARLHGYGG MGHILMPNLF FNSFVQGKGF 240 RVAKKQLGSQ VVGVRLWTIF LKCN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-17	96	162	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-17	96	162	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-17	96	162	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-17	96	162	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.21849	1e-122	bud\| flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM426448	1e-118	AM426448.2 Vitis vinifera contig VV78X198422.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	F6H1V7	4e-73	F6H1V7_VITVI; Uncharacterized protein
STRING	VIT_19s0014g00880.t01	6e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	9e-25	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	GSVIVT01014158001