PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014432001
Common NameVIT_19s0014g03560
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 243aa    MW: 26845.4 Da    PI: 8.1315
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014432001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14114211198
                        EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd+  + grlv+pkk+a+e+    +g+  e++t+++ d++gr+W + ++y  + +s++yvl  G k+Fv + + ++   v+F+++
  GSVIVT01014432001 114 FEKTLTISDADYKlGRLVIPKKCAQEYfpliSGP--EGVTIRILDTRGREWVFHYRYwsNANSQMYVLD-GLKDFVISMQWQA---VTFYRI 199
                        88999888877555**************976555..789******************666777779988.******9999884...666655 PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        +  +++lv+++++
  GSVIVT01014432001 200 E-PKGQLVLGLRK 211
                        4.66667777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-17111211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-23111213IPR015300DNA-binding pseudobarrel domain
CDDcd100178.82E-21112211No hitNo description
PfamPF023624.5E-12114211IPR003340B3 DNA binding domain
SMARTSM010191.6E-11114213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNTSTIAPNQ CDSPSWSTTL AESVHNTSSP CEVEESNNSD KVNGSKCEAN AVAKSGQSPF  60
HDTPLQMKAP LPNGQPCGSG AGQKGLDAKY QPRISDHELQ QISRDLNSVV TPLFEKTLTI  120
SDADYKLGRL VIPKKCAQEY FPLISGPEGV TIRILDTRGR EWVFHYRYWS NANSQMYVLD  180
GLKDFVISMQ WQAVTFYRIE PKGQLVLGLR KASVTPPSHK VWHTKLTLSP SVCVKQISVL  240
HE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-42922131124B3 domain-containing transcription repressor VAL1
5yzz_C1e-42922131124B3 domain-containing transcription repressor VAL1
5z00_C1e-42922131124B3 domain-containing transcription repressor VAL1
5z00_G1e-42922131124B3 domain-containing transcription repressor VAL1
5z00_K1e-42922131124B3 domain-containing transcription repressor VAL1
5z00_M1e-42922131124B3 domain-containing transcription repressor VAL1
6j9a_A1e-42922132125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.294900.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4392044e-97AM439204.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X204419.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019072961.11e-165PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X2
SwissprotQ0D5G46e-45Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLF6H2E11e-177F6H2E1_VITVI; Uncharacterized protein
STRINGVIT_19s0014g03560.t011e-177(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.15e-44high-level expression of sugar-inducible gene 2