PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01014468001

Common Name

LOC100262412, VIT_19s0014g03940

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NZZ/SPL

Protein Properties

Length: 248aa MW: 27236.8 Da PI: 9.5625

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01014468001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	59.4	1.2e-18	6	214	4	212
NOZZLE 4 slffmstdqn....svrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdts 90 s+f+ + n s++np+e l + l++ s+ + + sr rk a qkk rgmgva+ler ++ee kk ++ s GSVIVT01014468001 6 SIFLYKYQINstflSIQNPQEALATSLLLMASTEPTMPNrSSTSRARKT----ASA-QKKQPQRGMGVAQLERLRVEEWKKMTGITHLQPMS 92 5665554444222279*****98887755544333222556666654....443.344446*********9988876666655555 PP NOZZLE 91 sv....aaisntatrlpvpvdrgvvlqgfps.....slgssrilcggvgsgqvmidpvispwgfvetsatthelssisnpqmynassnnrcd 173 i+ + + p + g v g+ s +g+ ++ g g ++dp + ++ elss+++ + +rcd GSVIVT01014468001 93 LPghfrYQIPYQFAEPPPAPASGPVQPGLGSpgwvpRFGGGGFHGFSGGGGFRVVDPYRNDGAVGALTEASRELSSMPKMD----CVFDRCD 180 321111345555555443334455555555544444899988888888899999988766656666689997543....44679 PP NOZZLE 174 tcfkkkrldgdqnnvvrsngggfskytmipppmngydey 212 cfkkkr++ d+ gg ky+ pp+n +d GSVIVT01014468001 181 VCFKKKRMNADN----LGFSGGREKYAET-PPINSFDFL 214 *********9....5667999*986.679999964 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.2E-13	20	214	IPR014855	Plant transcription factor NOZZLE

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MATGTSIFLY KYQINSTFLS IQNPQEALAT SLLLMASTEP TMPNRSSTSR ARKTASAQKK 60 QPQRGMGVAQ LERLRVEEWK KMTGITHLQP MSLPGHFRYQ IPYQFAEPPP APASGPVQPG 120 LGSPGWVPRF GGGGFHGFSG GGGFRVVDPY RNDGAVGALT EASRELSSMP KMDCVFDRCD 180 VCFKKKRMNA DNLGFSGGRE KYAETPPINS FDFLGLDMAN DENRDLSRRR SPMTATYACY 240 NHSEVNH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM456440	0.0	AM456440.1 Vitis vinifera contig VV78X183252.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281410.1	0.0	PREDICTED: protein SPOROCYTELESS
TrEMBL	F6H2F9	0.0	F6H2F9_VITVI; Uncharacterized protein
STRING	VIT_19s0014g03940.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP10010	5	8

Link Out ? help Back to Top
Phytozome	GSVIVT01014468001
Entrez Gene	100262412