PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01014542001
Common NameLOC100267585, VIT_19s0014g04670
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 385aa    MW: 41725.1 Da    PI: 7.197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01014542001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.2e-062753131154
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  GSVIVT01014542001 275 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 313
                        5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.652264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-7274318No hitNo description
SuperFamilySSF474591.01E-11274329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0019275319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-10278322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MQGPDSSSGG GGGGGVLADP NLQMMGLGLS SQAMDWNQAL LRSGKAESSF GSMLQDQDMS  60
SNSNFNADQA QWRQKLFSGS CEDSSGTEYK QVNRGFSLDQ PQFSSHSSPG ESTVTCQGLP  120
TSFQVDSSVY GSPSTILQGL LGSDHQQNQS SFENRPMNYP YLGTYGVNSN EFLPSWSKVP  180
QFLRTSPPKQ PSHTQLHFSN NAPFWNASAA AMAADSRPSF SPTLQPQFST PTFNEKPKNS  240
SEIRDISSVA KKSSGETGTK RPRSETPSPL PAFKVRKEKM GDRITALQQL VSPFGKTDTA  300
SVLSEAIEYI KFLHEQVSAL STPYMKSGAS IQHQQNSEKS KEPEGPRQDL RSRGLCLVPV  360
SSTFPVTHET SVDFWTPTFG GTFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.166830.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4334530.0AM433453.2 Vitis vinifera contig VV78X186880.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280367.30.0PREDICTED: transcription factor bHLH123 isoform X1
SwissprotQ8GXT31e-91BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A438IDN50.0A0A438IDN5_VITVI; Transcription factor bHLH123
TrEMBLF6H2G90.0F6H2G9_VITVI; Uncharacterized protein
STRINGVIT_19s0014g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]