PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015037001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 253aa    MW: 28044.8 Da    PI: 9.4516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015037001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1890140155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++ykGVr +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  GSVIVT01015037001  90 CRYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALYCLRG 140
                        78*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-2990150No hitNo description
PfamPF008472.8E-1190140IPR001471AP2/ERF domain
PROSITE profilePS5103222.49791148IPR001471AP2/ERF domain
SMARTSM003802.8E-3291154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2991149IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2091149IPR016177DNA-binding domain
PRINTSPR003675.9E-1092103IPR001471AP2/ERF domain
PRINTSPR003675.9E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSISEVFEIE SHGSEDAPTR LLGVDPPHHI NTSRHSQTQQ NYTQILEQNP ICSKEILGTC  60
QNRNLRIRTR TEMVKKAIGV GSAPAESSDC RYKGVRKRKW GKWVSEIRLP NSRERIWLGS  120
YDTAEKAARA FDAALYCLRG RTAKFNFPEN PPKIAGGGSL TRSEIRAAAA KFANEDSSTA  180
STSHSIRIHY FQPFVFPEIF LIPGKGSDSM ASFSTASTCL GIFFPVSPSI QLLSENMRAA  240
DFVIFSSLMQ TY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1673148172Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.96230.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4263940.0AM426394.1 Vitis vinifera contig VV78X150841.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A438E8H41e-117A0A438E8H4_VITVI; Ethylene-responsive transcription factor ERF017
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-52ERF family protein