PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015353001
Common NameLOC100249096, VIT_11s0016g03560
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 343aa    MW: 37487 Da    PI: 6.8704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015353001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442062441255
                        HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  GSVIVT01015353001 206 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 244
                        6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.096194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-10204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-6204248No hitNo description
Gene3DG3DSA:4.10.280.102.9E-7208250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNRGVLQSSP VQQMMAGNPN WWNINSMRPP PQQPPPFLPS PSNLFPQYTP TSSLPMSASW  60
HDNQELPESW SQLLLGGLVG EEEKSGMSHF QAKKLENWED QVLHQATNPP VVDIKQENSA  120
SSYMYGHGNE DFQATKPTWS QIMPASSPKS CVTSFSSNML DFSSNKADVK HPQPDRSSEC  180
NSTATGGALK KARVQASPTQ PTFKVRKEKL GDRITALHQL VSPFGKTDTA SVLLEAIGYI  240
RFLQSQIEAL SLPYLGSGSG NMRQQPSSVQ GERNCIFPED PGQLLNDNGM KRKGASDQES  300
HEEPKKDLRS RGLCLVPVSC TLQVGSDNGA DYWAPALGGG FR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.129620.0flower| fruit| inflorescence| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4679911e-172AM467991.1 Vitis vinifera contig VV78X055551.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284145.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D11e-106BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A438IHV20.0A0A438IHV2_VITVI; Transcription factor bHLH68
TrEMBLD7TBK30.0D7TBK3_VITVI; Uncharacterized protein
STRINGVIT_11s0016g03560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3780714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]