PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015389001
Common NameLOC100250904, VIT_11s0016g03940, VITISV_009631
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 330aa    MW: 37321.1 Da    PI: 5.5053
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35121042103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F++k+y++++d++++ li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++l
  GSVIVT01015389001  12 FVMKTYQMVNDSSTDALITWGRANNSFIVFDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQRQL 94 
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i rkk++
  GSVIVT01015389001  95 LKNIVRKKHS 104
                        *******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-538101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3610101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEAPNNNIIA PFVMKTYQMV NDSSTDALIT WGRANNSFIV FDPLDFSQRI LPAYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEWFLRG QRQLLKNIVR KKHSSCGRSS FLLQAKLEDG  120
DEEILAEIER LKHEQKSLEE ELEGMTKRLE ATERRPQQMM AFLYKVVEDP ELIPTMMMEK  180
ERRRQLGEKK RRLLIQSTSS SSGTAGTASV KSEEEEDGST VGIISSPETL SHSSPSPDTS  240
TPAWVRPRQM MGWPLVAQQP YPLAAIPSPI YSGSVTGIGH FNTMSPPPEN TISSYKSSDS  300
GQLSYFTEME DGVETRPLPY PFSLLEGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-27110111120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.127960.0fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8698190.0KR869819.1 Vitis pseudoreticulata transcription factor HsfC1a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281028.10.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV524e-89HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A438JQ420.0A0A438JQ42_VITVI; Heat stress transcription factor C-1
TrEMBLA5BAT90.0A5BAT9_VITVI; Uncharacterized protein
STRINGVIT_11s0016g03940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-89heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]