PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015500001
Common NameVIT_11s0016g04940
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 249aa    MW: 27409.1 Da    PI: 9.1444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015500001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-104871225
                       -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                       k++lC+ f+ + +C+yGdrC+F H
  GSVIVT01015500001 48 KMKLCKKFYNGEECPYGDRCNFLH 71
                       789*******66************ PP
2zf-CCCH40.54.7e-13134160127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC+ +  tG+C++G++C+FaHg+
  GSVIVT01015500001 134 WKTKLCCKWETTGHCPFGEKCHFAHGQ 160
                        8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3334674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-74673IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-44673IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-104872IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-74871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16129164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-10130165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915133161IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5133160IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10134160IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MNPRIHPPNA PTSRGTSNIF FKTRICAKFK LEERGTKIWD EDQRIIHKMK LCKKFYNGEE  60
CPYGDRCNFL HEDPKKFRDD SARPRESFAI SIGTTGPPME HGSGSNLGSN LSSNLSSMNS  120
GLDPFRGNVK PTYWKTKLCC KWETTGHCPF GEKCHFAHGQ AELQMTGGGG GGGGWAEAEV  180
GNTCSLPAKL PSVPANVSTP PELGTGAPIN PERQNKKLLL QSKGFKKINR IYADWIDDLP  240
SLNNKVKD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4308770.0AM430877.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X179571.26, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656406.11e-154PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_010656407.11e-154PREDICTED: zinc finger CCCH domain-containing protein 39
RefseqXP_019078758.11e-154PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT812e-53C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLF6HH721e-177F6HH72_VITVI; Uncharacterized protein
STRINGVIT_11s0016g04940.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-51C3H family protein