PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015505001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 574aa    MW: 65434.1 Da    PI: 6.5127
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015505001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0690111527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C f++  G+C+ G+rC+F Hgp
  GSVIVT01015505001  90 PCYFYYN-GFCNKGERCSFLHGP 111
                        8**9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.502635IPR000571Zinc finger, CCCH-type
PfamPF156632.1E-11662No hitNo description
SMARTSM003560.032734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.4273763IPR000571Zinc finger, CCCH-type
SMARTSM003560.583962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8485112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-486111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-590112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MEDELQKRNT DCVYFLASPL TCKKGMDCEY RHSEGARLNP RDCWYWLSGS CLNPACAFRH  60
PPLDGHIEAS SEPVTLSHHS SVPVNKTNTP CYFYYNGFCN KGERCSFLHG PDSTGTETGP  120
TLIGRRPNSV ETATVTAIET QFQPKEDLQK LVFKNAFEQS SSPQISMSEY EEAAAVRSDS  180
LLPAEGFNQS RSLLSTDQSS EEQVDGPIEP EERWESSPGF DVLVDNISEN LVYEDEPEYL  240
LALEGEGREL NGQFLGYDFE DPVEYDLMYP EAEILYDHRI YDSFDCLDNE HSSDHVRNIP  300
GCSRERILDP ILPRKRKNFP VELAVTGRSG LDLRDRLRKR RVTDGHTVTR FSRRHDSSCL  360
IGRTRERRRR HGMDQQLQGR SASEVRKNII GMLSENETLS NRGNKQGWVR RSRLPKSRQH  420
YKEKGHSQRQ HISSEDSRKP VSRERISTRE YTTFTGPKSL AQIKEEKRKA EENGEGFGKM  480
GYSSNTPSAD FQGPKPLSEI LKDKRKLAHR GIDVVLLDVI LVHINVMVFG LGSYFPPTFF  540
SLCFALYNAY HAPWKQMETD TNYSIKMADL ISL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334340DRLRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4597400.0AM459740.2 Vitis vinifera contig VV78X120395.27, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656410.10.0PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X2
TrEMBLF6HH750.0F6HH75_VITVI; Uncharacterized protein
STRINGVIT_11s0016g04980.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220