PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01015567001

Common Name

LOC100254328, VIT_11s0016g05590

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

YABBY

Protein Properties

Length: 186aa MW: 20818.7 Da PI: 8.2174

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01015567001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	200.1	9.3e-62	6	158	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 + +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + + + ++ ++++ +t+ GSVIVT01015567001 6 DVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPNYTSPDYRIDL--GSSSKCNTK 87 5689******************************************99999999885........22233332222222..222222222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl GSVIVT01015567001 88 MAMR----APASNISEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158 2222....2333444445589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-70	8	158	IPR006780	YABBY protein
SuperFamily	SSF47095	5.76E-8	103	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	106	152	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSSCIDVASE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAPNYT SPDYRIDLGS SSKCNTKMAM RAPASNISEE RIVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ETNNQPKLDE GSEKHLMSKA 180 ALRNK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.17548	0.0	bud\| inflorescence\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285328.1	1e-138	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	2e-92	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	D7TC40	1e-137	D7TC40_VITVI; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-137	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-94	YABBY family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01015567001
Entrez Gene	100254328

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]