PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01015574001
Common NameVIT_11s0016g05650
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 143aa    MW: 16088.9 Da    PI: 9.22
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01015574001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-112301646
                       HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +k+lG++ W++Ia +++ gRt++++k++w++
  GSVIVT01015574001  2 HKLLGNR-WSLIAGRLP-GRTDNDVKNYWNT 30
                       899****.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.804136IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-14133IPR009057Homeodomain-like
CDDcd001675.24E-8132No hitNo description
PfamPF002493.5E-9230IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-9235IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MHKLLGNRWS LIAGRLPGRT DNDVKNYWNT RLNKGRSGGK RKSPSSDDNA GHKRRRGLPN  60
SRPNCDGSPE KSSEGSDGRK QEASHNIPDN NPRMEDTKSF NHDIKSPWLP IVEDKAFLFY  120
VEPFISFSDA FVLFETLGEI EC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13955KRKSPSSDDNAGHKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4855560.0AM485556.2 Vitis vinifera contig VV78X269058.24, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656503.11e-101PREDICTED: transcription factor MYB82-like
TrEMBLA0A438JQD81e-100A0A438JQD8_VITVI; Transcription factor MYB82
STRINGVIT_11s0016g05650.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-21myb domain protein 82