PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01016139001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Trihelix

Protein Properties

Length: 153aa MW: 16645.8 Da PI: 10.3339

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016139001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.8	8.7e-16	39	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L++++++++ +r+klk+++We++++++ r+ g++ ++p+qCk+k+e+++kry+ + ++ + s+++++ +++ GSVIVT01016139001 39 EWSEGGVTSLLDVYESKWLLRNRAKLKGTDWEDIAQQVsiRDSGMKalKTPNQCKNKIESMKKRYRIESSVNGPG-----SSWQFYGRMD 123 5***********************************99777775227*********************86.....469999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.2E-20	37	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MESGVAQTPA TATVTAAATA TATAPTVATK NPDKSKRDEW SEGGVTSLLD VYESKWLLRN 60 RAKLKGTDWE DIAQQVSIRD SGMKALKTPN QCKNKIESMK KRYRIESSVN GPGSSWQFYG 120 RMDGLLKGTS VQNRGGDVGF GNGWRLKKKM DD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM453393	0.0	AM453393.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X103689.4, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655155.1	1e-101	PREDICTED: uncharacterized protein LOC100267221 isoform X2
TrEMBL	A0A438BUG8	1e-99	A0A438BUG8_VITVI; Trihelix transcription factor ASIL2
STRING	XP_010278037.1	1e-51	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4409	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	7e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	GSVIVT01016139001