PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016176001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 386aa    MW: 43682.5 Da    PI: 7.6375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016176001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-51131401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        l+pGfrFhP+deelv++yLk+kv gk + + ++i+evdiyk ePw+L   +k+k+++ ewyfFs  d+ky +g r nrat+ gyWkatg+d+
  GSVIVT01016176001  13 LAPGFRFHPSDEELVQYYLKRKVCGKAIAF-DAIAEVDIYKKEPWNLGgeSKLKSRDMEWYFFSALDRKYGNGGRVNRATSYGYWKATGNDR 103
                        579************************999.99**************64358899999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +vl+ +++ vg+kktLvf++grap g++t+W+mheyrl
  GSVIVT01016176001 104 SVLH-GSRIVGMKKTLVFHSGRAPGGQRTNWIMHEYRL 140
                        ****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-599161IPR003441NAC domain
PROSITE profilePS5100557.02813161IPR003441NAC domain
PfamPF023657.8E-2715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASGLPATPP TALAPGFRFH PSDEELVQYY LKRKVCGKAI AFDAIAEVDI YKKEPWNLGG  60
ESKLKSRDME WYFFSALDRK YGNGGRVNRA TSYGYWKATG NDRSVLHGSR IVGMKKTLVF  120
HSGRAPGGQR TNWIMHEYRL VDDELVKALR DSYVVCRVFL KSEIGPPHKD RYAPFIEEEW  180
DDDKTGSSQG GKSVDEAIVD SKACIEESDL EQDAQSTTLR QSEHLKNSGS VLSLSPSERL  240
EDCPLTCTVN KESTIFPNKR SRHDDLNPQH SDASESSLMT IQECTITKKI SRTPPATFDI  300
SDGNATLPPS YLKYITYLED KQWTWPMLYI IFPYFLSLAN GRALSINLVV NTTQPSPKLR  360
NRTFCCCPLY CCFRNHFCYW AFVNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-441316215169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.12710.0inflorescence| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3844150.0FQ384415.1 Vitis vinifera clone SS0AAG1YJ18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265550.10.0PREDICTED: NAC domain-containing protein 105 isoform X1
TrEMBLF6HNB20.0F6HNB2_VITVI; Uncharacterized protein
STRINGVIT_13s0019g05230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1087158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.28e-84NAC domain containing protein 50