PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016493001
Common NameLOC100249572, VIT_13s0019g02120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 283aa    MW: 30817.4 Da    PI: 7.3596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016493001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000135678123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H++ H
  GSVIVT01016493001 56 YSCSFCRREFKSAQALGGHMNIH 78
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-65383No hitNo description
SMARTSM003550.00935678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1155683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGQAQYLMLM NKKHILNSHC QAPMSLFNDS WEEQAFAEDA AGALGLGGCI WPPRSYSCSF  60
CRREFKSAQA LGGHMNIHRR DRARLKQSLS PHNETDLHSQ NHGSHKPDSN PGPGFLSSPL  120
SPSRVSALST LESFSEHSFV SPPYSSSILQ GHPKGSSCSS PPTWSDSVAV TLLSISDSKA  180
ELQKNQTKEE SAIQSHEGST VQTDLSVSLN SVSRRNRSTG SDDDEATVGF KRPKTAVLSL  240
PFFLNPCPQQ RHPLQPEVLG PKPSSMEDID LELRLGDLPK VK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125178229superman protein
2l1o_A2e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4552750.0AM455275.2 Vitis vinifera contig VV78X116155.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277873.10.0PREDICTED: transcriptional regulator SUPERMAN
TrEMBLD7TLP70.0D7TLP7_VITVI; Uncharacterized protein
STRINGVIT_13s0019g02120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-25zinc-finger protein 10