PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01016538001

Common Name

LOC100258172, VIT_13s0019g01410

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Dof

Protein Properties

Length: 338aa MW: 35456.6 Da PI: 9.0847

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016538001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	72	132	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+s+ GSVIVT01016538001 72 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSK 132 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	59	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-33	75	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MVFSSVPVYL DPPNWQQQAN HQPGGSNDNP HLPPQQAPPP LPPVGGGGSG GTGTIRPGSM 60 ADRARLAKLP QPETALKCPR CESTNTKFCY FNNYSLSQPR HFCKACRRYW TRGGALRNVP 120 VGGGCRRNKR SKGNRSKSPV TGERQGGSSS ASAVPSNSCT SDMIGHLPPP PPPPQLSFLP 180 PLHHLADYGA GDIGLNFGGI QPPVAVSGGG NSGTDIEFPI GSCSGGGGPI LSGGLAEHWR 240 LQQVQQFPFL AGLEPPSGLY SFEGEGTEPP SYLGGSGHLR AKALDSGVTQ MTAVKIEENQ 300 GLNLSRNFLG LPGNDQYWSG NTWNDLSGSV KAKSAQR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476724	0.0	AM476724.2 Vitis vinifera contig VV78X088874.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010658563.1	0.0	PREDICTED: dof zinc finger protein DOF3.6 isoform X2
TrEMBL	D7TLT5	0.0	D7TLT5_VITVI; Uncharacterized protein
STRING	VIT_13s0019g01410.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-38	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	GSVIVT01016538001
Entrez Gene	100258172