PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016703001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 319aa    MW: 35427.3 Da    PI: 9.73
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016703001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1466153186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +Li+a  e+  +l+rg+lk+++W++v++ +      ++  ++ +qCk++++ ++k+yk +k+    +  +  s++p++++l+
  GSVIVT01016703001  66 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKDVADIVssreDYTKTAKTDIQCKNRIDTVKKKYKLEKAKIAAG--GGPSKWPFYQRLD 153
                        7*************************************843333344556679*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2564155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDDEEIQSH PSPDTGSPAS PRSNGRITVT VAAAPPPQNT LTLALPIQQA RTAGNGGGGG  60
GGREDCWSEG ATSVLIDAWG ERYLELSRGN LKQKHWKDVA DIVSSREDYT KTAKTDIQCK  120
NRIDTVKKKY KLEKAKIAAG GGPSKWPFYQ RLDHLIGPTA KIASASPATA TPLPLQNQLR  180
RRAPVDSDSS QSEPEASPDS TDSFPPETFE RKRPRMQREL NSNTPRNKNW SNSVRELTQA  240
ILKFGEAYEQ AETSKLQQVA DMERQRMKFA KELELQRMQF FMKTQLEISQ LNHGRRVGNN  300
SIHRNNNNNN NNNSDSSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.119810.0bud| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4753070.0AM475307.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X222065.21, clone ENTAV 115.
GenBankFQ3824920.0FQ382492.1 Vitis vinifera clone SS0ABG54YO09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654396.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG83e-90ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A438EWS40.0A0A438EWS4_VITVI; Trihelix transcription factor ASIL2
STRINGVIT_09s0002g00720.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.14e-556B-interacting protein 1-like 1