PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016711001
Common NameLOC100242956, VIT_09s0002g00800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 439aa    MW: 50125.7 Da    PI: 7.7577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016711001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08412432526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         Cr++a+ G C +Gd+CkF H+
  GSVIVT01016711001 412 VCRHYAK-GRCYFGDNCKFLHD 432
                        7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.3E-1091137IPR003034SAP domain
SuperFamilySSF689068.06E-892136No hitNo description
PfamPF020372.5E-10102136IPR003034SAP domain
SMARTSM005131.2E-4102136IPR003034SAP domain
PROSITE profilePS5080010.246102136IPR003034SAP domain
SMARTSM003566.6E-6408433IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183408434IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6409432IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5411432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-6411434IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAPSEQLPNV VMEEDDYSET EGSDSEDSND SQDDPTYDIF EETQSGFSNL SMEKKSKSRI  60
QKEMDMGFVE DLDDVEIVAP VLDEKDEKSF EMVQKMIEAG QLEKLKVDQC KVYLRKNGLR  120
LTGNKETLIQ RIKEHLGIIN GGGEKKYPVS SFVLNCKGDA CTGDVVMFEQ NVYEMFNIAS  180
RSASGPPCGS RIIAGHIVKD SYGAAKQQHT FTIEVLWSKG EKPLPPLHPL LIKGRNLYRL  240
KTLRQRWEDE GERQKVLMEK HSRGSLARSD REARIQEKEM RKNNRHLKVT RKAELKKNES  300
QSNPTKPGLS VDSGKLVQPP TQQKQSSNQD QQYPPLQREN LCPNTCKENI GVPQNMLKFP  360
QEIQHSKHDG CFANNHSHRE PLRSMNHFPP VIPLQRGYPP MPPSWGHNDK QVCRHYAKGR  420
CYFGDNCKFL HDLRKENM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4289540.0AM428954.2 Vitis vinifera contig VV78X004619.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272277.10.0PREDICTED: zinc finger CCCH domain-containing protein 62
TrEMBLD7TZN60.0D7TZN6_VITVI; Uncharacterized protein
STRINGVIT_09s0002g00800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP451266