PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016767001
Common NameVIT_09s0002g01400
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 324aa    MW: 37050.8 Da    PI: 6.7802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016767001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+ Ed++l +++k +G g W+  +++ g++R++k+c++rw++yl
  GSVIVT01016767001 14 RGAWTATEDKILTEYIKVHGEGKWRNLPKKAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding51.91.7e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  GSVIVT01016767001  67 RGNITHDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                        7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.8961IPR017930Myb domain
SuperFamilySSF466892.49E-2812108IPR009057Homeodomain-like
SMARTSM007179.7E-131363IPR001005SANT/Myb domain
PfamPF002496.7E-141461IPR001005SANT/Myb domain
CDDcd001671.21E-91661No hitNo description
PROSITE profilePS5129425.18962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2365116IPR009057Homeodomain-like
SMARTSM007175.2E-1566114IPR001005SANT/Myb domain
PfamPF002491.7E-1467110IPR001005SANT/Myb domain
CDDcd001672.74E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTAT EDKILTEYIK VHGEGKWRNL PKKAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI THDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKISSTP  120
NHRPRIQSEE RPNSTSISPR PSLNNGPPPV LHAKPSRCTK VFIATEPPKV DQVIETRPEP  180
DSSPAIGSGN ENDSNPSDFM IDFEMDANFL SEFLNSDFSQ LCDFHDGVEA DSNTNNTSST  240
SQHSSPNATE APLLMNEEET LQNSNLFSLD SFLDCEMDWP NMISNFLFFK IYQRIIRLYM  300
IPFNWNFNIF KFLQICFHDH VEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4396891e-155AM439689.2 Vitis vinifera contig VV78X249627.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275148.10.0PREDICTED: myb-related protein Zm38
TrEMBLF6HXX80.0F6HXX8_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-63myb domain protein 3