PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01016777001
Common NameVIT_09s0002g01480
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 687aa    MW: 75624.4 Da    PI: 8.1714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01016777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09572620348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lvd+v ++G g+W+ I r        Rt  ++k++w+++l
  GSVIVT01016777001 572 AWTLSEVMKLVDGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 620
                        7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.639565624IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-12567623IPR009057Homeodomain-like
SMARTSM007177.9E-9569622IPR001005SANT/Myb domain
CDDcd116601.05E-18571621No hitNo description
SuperFamilySSF466896.86E-16571630IPR009057Homeodomain-like
PfamPF002491.4E-6572620IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
METVVGVEGN DEAKFEDCVV EKSGPEPTQS KQIADPVVYK LVRVDGDGRL VPATDDEVME  60
VEDLLEEFKI EMPFVADTGQ TVECTSKEEF PSGNPHLECS EGMLQSVNTE IDAEKLSARL  120
ERHRACLSAS LSSYSEKSTQ YIGEMLQKVN QEERLRLAYG SPDHSSAYMN VDSQYSDEHD  180
KLPAIDKKLQ SKIPLQEIVP SSVLSSNDTH IDQSGSVGEC SNPPGGPMDS GSSASAVCTS  240
LKPDFTKLKG EICLDNLSIR ELHETFKATF GRETSVKDKQ WLKRRIAMGL TNSCDVSTTT  300
FIFKDNKSMK KVKEECCKSV DGTLIEDTVV GAKNDNCRDS PTSRNNRGEA HQILSGKRLR  360
NSSVEYDCGS DDLHTEQIAG KRIRKPTKRY IEELSEADSR EYGGRLTSSV KNSVHGQSSP  420
KSQARPVRNV CSEGKTVVTR LDSLGGSGVQ VPYVFRVRRS RPRKNFMALM KFNTNSMGMA  480
AKLVKKALGV RSSRTDNEGG NKVLQSRPAP KRLQLPLIGE PVKHEQCSVA DTIELEQRVE  540
LKHVDSSGDT SDDNIATVPT AKGGMRRKHH RAWTLSEVMK LVDGVSRYGA GRWSEIKRLA  600
FASYSYRTSV DLKDKWRNLL RASFALSPAE KGMSSRKHGS MPIPAAILLK VRELAEMHAQ  660
VAPNLGTSKP SGCGGRTVHE TRAGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457463RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.99210.0bud| cell culture| flower| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244670.0AM424467.2 Vitis vinifera contig VV78X123394.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654462.10.0PREDICTED: uncharacterized protein LOC100263481 isoform X2
TrEMBLF6HXY20.0F6HXY2_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-134TRF-like 6