PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01016867001

Common Name

VIT_09s0002g02300, VITISV_006257

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C2H2

Protein Properties

Length: 250aa MW: 28295 Da PI: 10.1066

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01016867001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.4	5.9e-06	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSVIVT01016867001 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	14	0.00015	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSVIVT01016867001 153 WKCDKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.8E-6	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.33E-7	76	99	No hit	No description
Pfam	PF12171	3.3E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	77	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.8E-5	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.33E-7	148	173	No hit	No description
SMART	SM00355	140	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MSNLTSASGE ASVSSGNRAE TAPMYPQQQY FAPPNQAQAQ VQAQPSVKKK RNLPGNPDPD 60 AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKKVYVC 120 PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFITHRAF CDALAEESAR AITGNPMSLQ QQQQFNSNHD FHAFQMKKEQ 240 QNNPRFGSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-36	149	210	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-36	149	210	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	115	KLKQRTSKEVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.11475	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	0.0	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019077826.1	1e-164	PREDICTED: protein indeterminate-domain 11
Swissprot	Q8H1F5	1e-120	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A5BN05	1e-163	A5BN05_VITVI; Uncharacterized protein
STRING	VIT_09s0002g02300.t01	1e-164	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-120	indeterminate(ID)-domain 11

Link Out ? help Back to Top
Phytozome	GSVIVT01016867001

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]