PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017034001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 126aa    MW: 13767.5 Da    PI: 10.291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017034001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-07104124122
                AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                        + y+GVr ++ +g+Wv+eIr+p
  GSVIVT01017034001 104 PVYRGVRMRS-WGKWVSEIREP 124
                        68*****998.*********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.033105125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-8105124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MKLVGWVSLH LFTSGLFETS LHYHLYCCIH FLGRIRGGFI LLVMGERPSS EAESTSNSTA  60
SASPSSPSSS GSSQSVPNSV SDTSKQVKAQ NPATKRGRDC NRHPVYRGVR MRSWGKWVSE  120
IREPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4437850.0AM443785.2 Vitis vinifera contig VV78X029792.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278906.19e-50PREDICTED: dehydration-responsive element-binding protein 3
TrEMBLA0A438GKQ32e-48A0A438GKQ3_VITVI; Dehydration-responsive element-binding protein 3
TrEMBLF6HYC52e-48F6HYC5_VITVI; Uncharacterized protein
STRINGVIT_09s0002g03940.t014e-49(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-14ERF family protein