PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017255001
Common NameLOC104880257, VIT_09s0002g06130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 317aa    MW: 35467.3 Da    PI: 8.9209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017255001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.3e-107296126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +kt lC+ f+  GtC  Gd C+FaHg
  GSVIVT01017255001 72 FKTQLCMKFRL-GTCINGDECNFAHG 96
                       69*********.*************9 PP
2zf-CCCH28.92e-09130153225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        k++lCr f+r+  C+yG+rC+F H
  GSVIVT01017255001 130 KMKLCRIFSRGEKCPYGERCNFLH 153
                        899*******66************ PP
3zf-CCCH308.7e-10212238127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++t+lC+ +  +G C y ++C FaHg+
  GSVIVT01017255001 212 WRTRLCHKWEMSGNCAYREKCVFAHGQ 238
                        79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.4E-1267103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-769101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6577198IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-57197IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-87296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-9128153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126128156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6128154IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4128155IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7130153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-13208243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-8211242IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-4211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371211239IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5212238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSFPTNTPPV FAPYAESCGD ALECWPQFPM NRSSENCPHI ETPLFKKPKI SETVTNLRMP  60
GSNNKVMTDT FFKTQLCMKF RLGTCINGDE CNFAHGTGDI RRPLPHGQEL SCKEGYVAGI  120
WNRDHRLNSK MKLCRIFSRG EKCPYGERCN FLHEGFEKCR EGSGRFRESS SISIGCTGSA  180
RGYRNGSGQL EFKRFGDSSL NANQVNANPG FWRTRLCHKW EMSGNCAYRE KCVFAHGQAE  240
LRKHAVQPEG GKEHAAPKTL PSAKADALTH KTGPGATYNQ PLQEKKCAFK WEKLGKINGI  300
YADWIDDMPL VHSSVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4762650.0AM476265.1 Vitis vinifera contig VV78X004021.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654755.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
TrEMBLD7U0X50.0D7U0X5_VITVI; Uncharacterized protein
STRINGVIT_09s0002g06130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-51C3H family protein