PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017571001
Common NameLOC100261023, VIT_09s0002g09120
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 176aa    MW: 19791.1 Da    PI: 9.1246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017571001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18856254
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                       +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  GSVIVT01017571001  8 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 56
                       69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-31764No hitNo description
PROSITE profilePS5103220.719865IPR001471AP2/ERF domain
SMARTSM003807.4E-41871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-33865IPR001471AP2/ERF domain
PfamPF008471.8E-11857IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21866IPR016177DNA-binding domain
PRINTSPR003672.7E-11920IPR001471AP2/ERF domain
PRINTSPR003672.7E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAGKQQQRYR GVRQRHWGSW VSEIRHPLLK TRIWLGTFET AEDAARAYDE AARLMCGPRA  60
RTNFSYNPND SQSSSSRLLS ATLTAKLHRC YMASLQAAKE PLATHLQQPH YSPNFATDGN  120
AGNSRQVDVG SPAKRRRQVQ GKRVGGEDEE FKVLEDDHIE QMIEELLHSG SVELN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16972670ATERF1
3gcc_A2e-16972670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.149680.0stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4627230.0AM462723.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X236602.19, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274216.11e-130PREDICTED: ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-69ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLD7TZG91e-129D7TZG9_VITVI; Uncharacterized protein
STRINGVIT_09s0002g09120.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]