PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01017714001

Common Name

HYG2

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 187aa MW: 21352.4 Da PI: 10.3233

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01017714001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.5	1.1e-11	103	161	2	60
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +e +r +r+ +NR++A+ R+RKk ++ Le +++eL+ N++L +++++l +e l+ GSVIVT01017714001 103 REYRRLKRLLRNRVSAQQARERKKVYVNDLESRAQELQDRNSKLEEKISTLVNENTMLR 161 7899***********************************************99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-12	102	166	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-11	103	162	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.955	104	167	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.63E-13	105	165	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-16	106	166	No hit	No description
PROSITE pattern	PS00036	0	109	124	IPR004827	Basic-leucine zipper domain
CDD	cd14704	1.22E-12	116	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010224	Biological Process	response to UV-B
GO:0080167	Biological Process	response to karrikin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSLPNPTPSA SRSYEQEGSS SSSPWRRHTA DSFPPLNIHS DNKHKVEDSD EDLFRVPDVE 60 AQPPSDSTRT TTTTTTTNTS NNPEVQQQTS SGKRRRGRNP VDREYRRLKR LLRNRVSAQQ 120 ARERKKVYVN DLESRAQELQ DRNSKLEEKI STLVNENTML RKVLMNTRPK MDDSSTESKH 180 DQLGKS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12322	1e-127	fruit\| pedicel

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269\|PubMed:12023303}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ423106	0.0	KJ423106.1 Vitis vinifera cultivar Cabernet Sauvignon basic leucine zipper transcription factor HYG2 (HYG2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275566.2	1e-132	PREDICTED: transcription factor HY5-like
Swissprot	Q8W191	3e-50	HYH_ARATH; Transcription factor HY5-like
TrEMBL	A0A023PK93	1e-132	A0A023PK93_VITVI; Transcription factor HYH
STRING	VIT_05s0020g01090.t01	6e-67	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2081	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17609.2	2e-48	HY5-homolog

Link Out ? help Back to Top
Phytozome	GSVIVT01017714001

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ciolfi A, et al. Dynamics of the shade-avoidance response in Arabidopsis. Plant Physiol., 2013. 163(1): p. 331-53 [PMID:23893169] Kreslavski VD, et al. Effect of preillumination with red light on photosynthetic parameters and oxidant-/antioxidant balance in Arabidopsis thaliana in response to UV-A. J. Photochem. Photobiol. B, Biol., 2013. 127: p. 229-36 [PMID:24080425] Tossi V,Lamattina L,Jenkins GI,Cassia RO Ultraviolet-B-induced stomatal closure in Arabidopsis is regulated by the UV RESISTANCE LOCUS8 photoreceptor in a nitric oxide-dependent mechanism. Plant Physiol., 2014. 164(4): p. 2220-30 [PMID:24586043] Tsai HL, et al. HUA ENHANCER1 is involved in posttranscriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis. Plant Cell, 2014. 26(7): p. 2858-72 [PMID:25052717] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Velanis CN,Herzyk P,Jenkins GI Regulation of transcription by the Arabidopsis UVR8 photoreceptor involves a specific histone modification. Plant Mol. Biol., 2016. 92(4-5): p. 425-443 [PMID:27534420] Loyola R, et al. The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment. J. Exp. Bot., 2016. 67(18): p. 5429-5445 [PMID:27543604] Feng XJ, et al. Light affects salt stress-induced transcriptional memory of P5CS1 in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(51): p. E8335-E8343 [PMID:27930298] Li C, et al. Characterization and functional analysis of four HYH splicing variants in Arabidopsis hypocotyl elongation. Gene, 2017. 619: p. 44-49 [PMID:28389360] Zhang Y, et al. Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway. PLoS ONE, 2017. 12(7): p. e0180449 [PMID:28683099] Woloszynska M, et al. The Elongator complex regulates hypocotyl growth in darkness and during photomorphogenesis. J. Cell. Sci., 2019. [PMID:28720596] Serivichyaswat PT,Susila H,Ahn JH Elongated Hypocotyl 5-Homolog (HYH) Negatively Regulates Expression of the Ambient Temperature-Responsive MicroRNA Gene MIR169. Front Plant Sci, 2017. 8: p. 2087 [PMID:29270188] Yang B, et al. RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity. PLoS Genet., 2018. 14(12): p. e1007839 [PMID:30566447]