PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017741001
Common NameVIT_05s0020g01350
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YB
Protein Properties Length: 139aa    MW: 15389.1 Da    PI: 4.8782
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017741001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.62.1e-5417112297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eqdr+lPianvsrimk++lP+nakisk+aket+qecvsefisfvt+eas+kc++e+rkt+ngdd++wala lGf+dy+ plk yl++yrel
  GSVIVT01017741001  17 KEQDRLLPIANVSRIMKQTLPTNAKISKEAKETMQECVSEFISFVTGEASEKCKKERRKTVNGDDICWALAALGFDDYAGPLKRYLQRYREL 108
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        eg++
  GSVIVT01017741001 109 EGDR 112
                        **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-5212127IPR009072Histone-fold
SuperFamilySSF471131.15E-3819123IPR009072Histone-fold
PfamPF008084.9E-282286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-175068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-176987No hitNo description
PRINTSPR006151.7E-1788106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0004709anatomyaxillary bud
PO:0025531developmental stagebud swell stage
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MVDNPGASAS TDDGSIKEQD RLLPIANVSR IMKQTLPTNA KISKEAKETM QECVSEFISF  60
VTGEASEKCK KERRKTVNGD DICWALAALG FDDYAGPLKR YLQRYRELEG DRVLNQEKAG  120
NTEENDEPSS CRGSQPRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4416107192Transcription factor HapC (Eurofung)
4g92_B2e-4416107192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4857040.0AM485704.2 Vitis vinifera contig VV78X028192.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019075476.11e-99PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822486e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLD7T6E23e-98D7T6E2_VITVI; Uncharacterized protein
STRINGVIT_05s0020g01350.t015e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]