PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01017770001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 1128aa    MW: 125056 Da    PI: 9.5358
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01017770001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-104681340
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        W++eE e++++a +++G++ Wk++a+ +  +R+ +++
  GSVIVT01017770001 46 QWSKEELERFYEAYRKHGKD-WKKVASVVR-NRSVEMV 81
                       6*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.04E-114290IPR009057Homeodomain-like
PROSITE profilePS5129310.6564295IPR017884SANT domain
SMARTSM007175.3E-64391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-54581IPR009057Homeodomain-like
PfamPF002493.1E-94681IPR001005SANT/Myb domain
CDDcd001671.96E-74781No hitNo description
PfamPF065841.5E-32584684IPR033471DIRP domain
SMARTSM011356.6E-56584685IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1128 aa     Download sequence    Send to blast
MAPTKKSRTV TKRFSYVSDI SPKKDGEKAN KSGLRKRKLS DMLGSQWSKE ELERFYEAYR  60
KHGKDWKKVA SVVRNRSVEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYTVLEGSDS  120
GQESNDGTGT SRKPPKRGRG KIRPNSSKEL DGHFPDLSQS PLAASSYGCL SLLKKKRSGG  180
SRPRAVGKRT PRFPVSYSYD KDNGQKYFSP TRQGLKLKVD SVDDDVAHEV ALTLAKASQR  240
GGSPQKGKKF YGKKAEVEDS GNNHLDDIKE ACSGTEEGQK LSAVRGRLET EVVDAKIVRS  300
SSQGTRKRSK KVLFGGDEGT AFDALQTLAD LSLMMPATNI DTESSVPVKG ENIDIVDESK  360
TLDVMPVNHR REKPRTLGAK VKGNNSVPGV NIPPLKASKL EKFSALDISS FPEIKEGPQP  420
SITGSRKRKQ KSFGFKGMES ETHSDSNLSV SQKTEATDEG KKPVSKGKRS SHSASHPKQG  480
KLVKPPERCS SSTETRREEN YLVVPAQVSS ANQVHLPTKV RSRRKMDTQK PSFQKDLRFA  540
ENYVNDQPII PIPSVQDRAR TLKEKLSNCL SCYRVRRWCA FEWFYSAIDY PWFAKKEFVE  600
YLDHVGLGHV PRLTRVEWGV IRSSLGKPRR FSEQFLKEEK EKLNQYRDSV RTHYTELRAG  660
TREGLPTDLA PPLSVGQRVV ALHPRTREIH DGKVLTVDRT WCRVQFERPE LGVELVMDID  720
CMPLNPLENM PASLTKHSLA VNKFFENVSE LKMNGGPKDR KITEYGKFST SENMENVDGP  780
SHLSPSTYPI NNLLKQTKAG STNANFHAKV GSGEAANSQQ VANSQSIILA QNQGKEADVQ  840
ALSELTRALD KKEAVLCELR RMNDEVSENY KDGDSSLKES DLFKKQYAAL LVQLNEVDEQ  900
VSSALIRLRQ RNTYRGNSPV TWPKPMASLA DPGGLMSSFD CSSCYTQESG THVVEIVESS  960
RKKARTMVDA AMQAMSSLKE EGNNVERIED AIDFVNNRLL VDDSGMSTMR SSAAPDPLHG  1020
SLASQDQFTS CTSNPLSGSQ APDLKLNISS DDNEAQIPAE LITHCVATLL MIQKCTERQF  1080
PPANVAQILD SAVTSLQPCC SQNLPIYAEI QKCMGIIRNQ ILALIPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338LRKRKL
2424429SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.143690.0bud| flower| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4372330.0AM437233.2 Vitis vinifera contig VV78X223624.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649755.10.0PREDICTED: protein ALWAYS EARLY 3
SwissprotQ6A3320.0ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLF6HDG10.0F6HDG1_VITVI; Uncharacterized protein
STRINGVIT_05s0020g01610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24791321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]