PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018041001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 169aa    MW: 19375.7 Da    PI: 9.6815
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.6e-36121032102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sws  +nsfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k l
  GSVIVT01018041001  12 FLNKTYDLVDDPSTDSIVSWSIGNNSFVVWDPQIFAGNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFLRGQKPL 94 
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l+kikrkk 
  GSVIVT01018041001  95 LKKIKRKKA 103
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.03E-358101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-608101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-388101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3112101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-201235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-205062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEGLHDIGPP PFLNKTYDLV DDPSTDSIVS WSIGNNSFVV WDPQIFAGNL LPRYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW EFANEEFLRG QKPLLKKIKR KKALQPYTSQ QAVAQKATTG  120
YKSLPPSNGA KDQRDRVETE TDDEFLGKSY KESQYHTEIG PTKQNKRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-281010118120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4477051e-114AM447705.1 Vitis vinifera contig VV78X039175.7, whole genome shotgun sequence.
GenBankAM4737301e-114AM473730.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X250909.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279339.12e-79PREDICTED: heat stress transcription factor A-6b
SwissprotQ6F3881e-57HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLF6HDT86e-78F6HDT8_VITVI; Uncharacterized protein
STRINGVIT_05s0020g04090.t019e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-50heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]