PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018111001
Common NameLOC100247714, VIT_05s0020g04780
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 177aa    MW: 20211.9 Da    PI: 10.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.7e-092570555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       h +rEr RR++ ++++  L +llP+      +K +K +i e+A + I++Lq
  GSVIVT01018111001 25 HMMRERARRENQKQSYLALHSLLPHG-----TKSDKNSIIEMAKHEIQKLQ 70
                       899**********************7.....7999999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-121584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9222069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-72474No hitNo description
Gene3DG3DSA:4.10.280.106.1E-92489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-62570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-72675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MELLRGNWSA IRNSGESDRG RSYRHMMRER ARRENQKQSY LALHSLLPHG TKSDKNSIIE  60
MAKHEIQKLQ SSKEELKRRN QELNAKLREE AMVLNIGFRV GNPSSGIDSM EEVLKCLKNM  120
DLKTTAIHSQ FSPQQFSAAV KIQTQIGAGI VEREVGRTLD EVERNLNSNF REGWFG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.153100.0flower| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4265481e-155AM426548.2 Vitis vinifera contig VV78X271917.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284231.11e-126PREDICTED: transcription factor bHLH92 isoform X2
SwissprotQ9FIX53e-42BH092_ARATH; Transcription factor bHLH92
TrEMBLF6HDY61e-125F6HDY6_VITVI; Uncharacterized protein
STRINGVIT_05s0020g04780.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]