PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018165001
Common NameLOC100244381, VIT_15s0021g02690
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 212aa    MW: 23433.4 Da    PI: 10.8278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-163378555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  GSVIVT01018165001 33 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 78
                       9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-202596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.8152877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-183388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-163382No hitNo description
PfamPF000109.6E-143378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-183483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MILKRRAGDE EDKKRGTGKS SVSSKRSRAA AIHNQSERKR RDKINQRMKT LQKLVPNSSK  60
TDKASMLDEV IEYLKQLQAQ VQMMNRMNMS PMMMPMTLQQ QLQMSLMAQM GMGMGMSPMG  120
MGVVDMNTIA RPNVATTGIS PLLHPTPFLP LTSWDVSGDR LPAAPTMVPD PLAAFLACQS  180
QPMTMDAYSR MAALYQHLHQ HPASSARSQG L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRD
23742RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3920710.0FQ392071.1 Vitis vinifera clone SS0AFA7YJ21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275629.21e-147PREDICTED: transcription factor UNE10
SwissprotQ8GZ383e-59UNE10_ARATH; Transcription factor UNE10
TrEMBLF6GV581e-146F6GV58_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02690.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-28bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]