PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018272001
Common NameLOC100853485, VIT_15s0021g01590
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 206aa    MW: 22629.1 Da    PI: 5.4102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018272001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1982132255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +gr++AeIrdp +ng  +r++lg++ tae+Aa a+++a+ +++g
  GSVIVT01018272001  82 RYRGVRRRP-WGRYAAEIRDPAKNG--ARVWLGTYETAEDAALAYDRAAFRIRG 132
                        7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3082141IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2382141IPR016177DNA-binding domain
SMARTSM003807.0E-3682146IPR001471AP2/ERF domain
PfamPF008471.3E-1382132IPR001471AP2/ERF domain
PROSITE profilePS5103224.69882140IPR001471AP2/ERF domain
PRINTSPR003671.7E-108394IPR001471AP2/ERF domain
CDDcd000187.83E-2390140No hitNo description
PRINTSPR003671.7E-10106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGNTTFNSD FALLESVRRY LLEDSDLPHP FSANAPADSA TNPTFTENWE NSPVLDAAAA  60
SGVVGEVKAE TQEAAGPEEW RRYRGVRRRP WGRYAAEIRD PAKNGARVWL GTYETAEDAA  120
LAYDRAAFRI RGSRALVNFP QRIGSGDPEP VRITPKRRSP QPSLSAAAAP ALKRRKGDVD  180
STVEVEAATE NVVDVFQLHQ LWVDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3481147470ATERF1
3gcc_A1e-3481147470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155175KRRSPQPSLSAAAAPALKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4347330.0AM434733.1 Vitis vinifera contig VV78X030850.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003633905.11e-147PREDICTED: ethylene-responsive transcription factor 2
SwissprotO803384e-44EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLD7SLY31e-146D7SLY3_VITVI; Uncharacterized protein
STRINGVIT_15s0021g01590.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.12e-23ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]