PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01018456001

Common Name

VIT_16s0022g02290

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Trihelix

Protein Properties

Length: 960aa MW: 107998 Da PI: 7.736

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01018456001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.6	3.8e-09	201	257	19	75
trihelix 19 erlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e+ GSVIVT01018456001 201 SSRMRGKTRADKDREVAEFLNRHGVSRDAKTAGTKWDNMLGEFRKVYEWERRGEREQ 257 4455789999999***************************************95444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	1.34E-15	811	945	IPR011009	Protein kinase-like domain
CDD	cd00180	1.57E-14	811	946	No hit	No description
Gene3D	G3DSA:1.10.510.10	1.7E-7	813	947	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MGDKGEATKK QQQQQHSTSP QDPLEESTET RQQHHHQQSP VVVVTGAQFI PPLYVPSGAS 60 SATFEQQQQQ FDVLNPKRPR YGSGQWKLLP SPSHHQQQQK QTQMAILNTE SSPSPTTNPH 120 TQLHTTAASS SDTASSPSHS PIPSLSAASG QETNKPEGEH FHQQFRKGKY VSPVWKPNEM 180 LWLARAWRIQ YQGGSDGSGS SSRMRGKTRA DKDREVAEFL NRHGVSRDAK TAGTKWDNML 240 GEFRKVYEWE RRGEREQGGK SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTPQS 300 RGASAIVSVD DSRKALPPPP PFKEDDISLS ARTKQLVMGS GGEAFYHGTR GSQLGFESSL 360 DIGGPSSSSS SKELRRIGKI RMTWEESVSL WAEEGEHHRG RVRLQGSSFL NADELTFLDD 420 STVACTIETF EDGPLKGFSV DRFISGQQVK VFGRRKNPHI TVSLILSGFT ERVQLPLAEP 480 SIRSIPPWEF QDPTEYYVGC LRAPPTTLPS LFELSWHLQE PPPEDLRFPL RRDVYRDLPQ 540 GKEVFFTTST ELLDCRAFTF DILSSIIRSN PSISAATATS RDSFVGLWDD CINRVVSKFC 600 SIEMIVIRKP SSSSAEALQD QWPNVTGFVR NFCLWRGEET DQLRDGHIDP SSSIVEKLLW 660 TYMDLPYLLG YYAVGYMVTF CALSRSQDRV IRTDLYSLDL STPSERIKGL IPCWRIAGLL 720 PLLADRCFNN INNGSNYKSF PYSDFERIDS CNGNIIEVTP NTVAKYFSSR RKWGAVKEIY 780 DFLDHRIPHA EFILRSSEKD LVLIFKPRGC KSKPTNCDQL VEALKNVTKA LVALHDLSFM 840 HRDLSWDKVM RRSDRDSEWF VCGFDEAVGA PQIYPHGAAT PATSGRHAPE MGRGLHGIKV 900 DVWGVGHLVK TCGLVAVPKL LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSLSATGGY*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MGDKGEATKK QQQQQHSTSP QDPLEESTET RQQHHHQQSP VVVVTGAQFI PPLYVPSGAS  60
SATFEQQQQQ FDVLNPKRPR YGSGQWKLLP SPSHHQQQQK QTQMAILNTE SSPSPTTNPH  120
TQLHTTAASS SDTASSPSHS PIPSLSAASG QETNKPEGEH FHQQFRKGKY VSPVWKPNEM  180
LWLARAWRIQ YQGGSDGSGS SSRMRGKTRA DKDREVAEFL NRHGVSRDAK TAGTKWDNML  240
GEFRKVYEWE RRGEREQGGK SYFRLSPYER KLHRLPASFD EEVFEELSQF MGSRMRTPQS  300
RGASAIVSVD DSRKALPPPP PFKEDDISLS ARTKQLVMGS GGEAFYHGTR GSQLGFESSL  360
DIGGPSSSSS SKELRRIGKI RMTWEESVSL WAEEGEHHRG RVRLQGSSFL NADELTFLDD  420
STVACTIETF EDGPLKGFSV DRFISGQQVK VFGRRKNPHI TVSLILSGFT ERVQLPLAEP  480
SIRSIPPWEF QDPTEYYVGC LRAPPTTLPS LFELSWHLQE PPPEDLRFPL RRDVYRDLPQ  540
GKEVFFTTST ELLDCRAFTF DILSSIIRSN PSISAATATS RDSFVGLWDD CINRVVSKFC  600
SIEMIVIRKP SSSSAEALQD QWPNVTGFVR NFCLWRGEET DQLRDGHIDP SSSIVEKLLW  660
TYMDLPYLLG YYAVGYMVTF CALSRSQDRV IRTDLYSLDL STPSERIKGL IPCWRIAGLL  720
PLLADRCFNN INNGSNYKSF PYSDFERIDS CNGNIIEVTP NTVAKYFSSR RKWGAVKEIY  780
DFLDHRIPHA EFILRSSEKD LVLIFKPRGC KSKPTNCDQL VEALKNVTKA LVALHDLSFM  840
HRDLSWDKVM RRSDRDSEWF VCGFDEAVGA PQIYPHGAAT PATSGRHAPE MGRGLHGIKV  900
DVWGVGHLVK TCGLVAVPKL LRELQNRCLD QNPEQRPTAA DCYHHLLQLQ SSLSATGGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM482755	0.0	AM482755.1 Vitis vinifera contig VV78X022724.14, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010662347.1	0.0	PREDICTED: uncharacterized protein LOC100241288
TrEMBL	F6HAQ5	0.0	F6HAQ5_VITVI; Uncharacterized protein
STRING	VIT_16s0022g02290.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP9479	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01018456001