PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018459001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 232aa    MW: 25944.7 Da    PI: 10.0098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018459001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-1065112655
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +Er+RR+++ +  + Lr+llP       ++K s ++   +Av+YI++Lq
  GSVIVT01018459001  65 RDMERQRRQEMANLNASLRSLLPLeY---VKGKRSISDHMHEAVNYINHLQ 112
                        579*********************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-757116No hitNo description
SuperFamilySSF474593.01E-1258130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.42459111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-964130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-765112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTREYSAIQS NQNKRNLNAS THSIAFGLGN NLPKNMEKSP RQKVVLTPGK NTENTSSSNK  60
KILRRDMERQ RRQEMANLNA SLRSLLPLEY VKGKRSISDH MHEAVNYINH LQMKIQDLGT  120
KRDELRNQSN MSACDSESGS SYKRSRHCVI VSPCMDGVEI LISGGFKEGL LLSKVMEVLL  180
EEGLGVHRCV STKVNEGLLH TMNCKQVSDP TGFDLCGLRQ KLWNAVTPSS R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4498530.0AM449853.2 Vitis vinifera contig VV78X262061.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081510.11e-141PREDICTED: transcription factor bHLH118
TrEMBLA5B7X61e-143A5B7X6_VITVI; Uncharacterized protein
STRINGVIT_16s0022g02270.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.13e-27bHLH family protein