PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018460001
Common NameVIT_16s0022g02250
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 205aa    MW: 22685 Da    PI: 7.7559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018460001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-093787355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        +   +Er+RR+++ +  + Lr+llP       ++K s ++   +Av+YI++Lq
  GSVIVT01018460001 37 IMRRDMERQRRQEMANLNASLRSLLPIeY---IKGKRSISDHMHEAVNYINDLQ 87
                       567789*********************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.42E-83391No hitNo description
SuperFamilySSF474591.7E-1233110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5253486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-63887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-838112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEGSNLPKNT EKSPRKKELL ATPGDNDGNT SGGDRKIMRR DMERQRRQEM ANLNASLRSL  60
LPIEYIKGKR SISDHMHEAV NYINDLQMKI QDLGNKRDAL KRQCNMSASH LESRSSEICP  120
PNCVVVSPCL GGVEILVSGG FREEGLLSRV MELLFEERLS VVSCVSTKVN EGLLHTINCK  180
VADPSCVDLS MLQQKLLDAA NPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3792170.0FQ379217.1 Vitis vinifera clone SS0AEB11YB17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271172.21e-148PREDICTED: transcription factor bHLH118
TrEMBLD7T1U51e-147D7T1U5_VITVI; Uncharacterized protein
STRINGVIT_16s0022g02250.t011e-148(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-34bHLH family protein