PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018461001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 248aa    MW: 27741.8 Da    PI: 9.5874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018461001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-1271122255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +  h  +Er+RR+++ + +  Lr+llP       ++K   +e    Av+YIk+Lq
  GSVIVT01018461001  71 KIVHRDVERQRRQDMATLYTSLRSLLPLeY---IKGKRAISEHMNGAVNYIKHLQ 122
                        6679************************77...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-1366136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.19269121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-870118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-971122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.29E-1074126No hitNo description
SMARTSM003534.3E-475127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-4119139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFPLHQGNEL LFRIPYTPSK QYIIQQDMIL DHASLEASNL SNHKGKSPNR KLFAQDNNDE  60
ISNDGKKKKK KIVHRDVERQ RRQDMATLYT SLRSLLPLEY IKGKRAISEH MNGAVNYIKH  120
LQKKIKELGE KRNELKSLAN SSSRNSSGNF VTVCPCWGGV EIVVSSGGEK EGMPLSRALE  180
TLLEEGLSVI SCISTKVNGR LLHTIHCEVS DITSIDLHGL QQQLSDQVLP HLDKLPSNTA  240
LRNIPTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4569061e-176AM456906.2 Vitis vinifera contig VV78X030623.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271141.10.0PREDICTED: transcription factor bHLH118
SwissprotQ9FLI04e-46BH120_ARATH; Transcription factor bHLH120
TrEMBLF6HAQ71e-159F6HAQ7_VITVI; Uncharacterized protein
STRINGVIT_16s0022g02240.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.16e-38bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]