PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018787001
Common NameLOC100267850, VIT_04s0023g03310
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WOX
Protein Properties Length: 281aa    MW: 31387.5 Da    PI: 6.5257
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018787001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-203596257
                       T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  GSVIVT01018787001 35 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 96
                       58*****************8678*************************************97 PP
2Wus_type_Homeobox1147.8e-373498265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  GSVIVT01018787001 34 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 98
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-1128102IPR009057Homeodomain-like
PROSITE profilePS5007110.5113197IPR001356Homeobox domain
SMARTSM003891.1E-533101IPR001356Homeobox domain
CDDcd000864.01E-73698No hitNo description
PfamPF000462.1E-173696IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-73696IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEPQQQLQQQ QQQNQQQPNE DSGSSKGSFL CRQSSTRWTP TTDQIRILKD LYYNNGVRSP  60
SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF TTDMPMQRSL GNAGWRPDDP  120
IHNKFHTIPT PGISSPSSSS SPSVLAVGQM GSFGYGSVER SFTDCSISAG GGRGGVGGSI  180
NQSFEWVGMD PYSSSYALFD KRKTMGESFE EEQEEEATPE IETLPLFPMH AEDITGFCNI  240
KPESDAYYSG WYRPADAKTS SRTSLELSLN SYAGRSPDSP *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4474180.0AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266323.10.0PREDICTED: protein WUSCHEL
SwissprotQ8LL112e-94WUS_PETHY; Protein WUSCHEL
TrEMBLA0A438EVM10.0A0A438EVM1_VITVI; Protein WUSCHEL
TrEMBLD7SP030.0D7SP03_VITVI; Uncharacterized protein
STRINGVIT_04s0023g03310.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-47WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]