PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018818001
Common NameLOC100852825, VIT_04s0023g03030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family DBB
Protein Properties Length: 185aa    MW: 20366.2 Da    PI: 6.9037
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018818001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.2e-07433534
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                        C+ +e+  ++lfC  ++  lC+ C ++ H
  GSVIVT01018818001  4 LCDVCESAAAILFCAADEAALCRVCDEKVH 33
                       7**************************998 PP
2zf-B_box26.81.1e-085291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  GSVIVT01018818001 52 DVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGgkrtH 91
                       6799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.168147IPR000315B-box-type zinc finger
PfamPF006435.1E-6342IPR000315B-box-type zinc finger
CDDcd000217.26E-7345No hitNo description
SMARTSM003368.2E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445196IPR000315B-box-type zinc finger
PfamPF006439.6E-75290IPR000315B-box-type zinc finger
CDDcd000216.68E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRVCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGTSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKSGN LEDPALLPME  120
PGENRRGQNQ SSKPTVVENQ QNRRVSPVPT MDANADGHAK MDTKLIDLNM KPHRIHGQAS  180
NNQH*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3913940.0FQ391394.1 Vitis vinifera clone SS0AP1YP20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631872.11e-136PREDICTED: B-box zinc finger protein 19 isoform X2
SwissprotC0SVM52e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLD7SP261e-134D7SP26_VITVI; Uncharacterized protein
STRINGVIT_04s0023g03030.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-79DBB family protein