PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018827001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 1363aa    MW: 151242 Da    PI: 7.5048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018827001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.7e-0613391362226
                         -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                         +++ C+ f+++G+Ck G++C + H+
  GSVIVT01018827001 1339 GQRVCK-FFESGHCKKGASCDYLHP 1362
                         6799**.8888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.8E-9110170IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.56E-8112168IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.618115181IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7117163IPR001965Zinc finger, PHD-type
CDDcd155681.54E-19117162No hitNo description
PROSITE patternPS013590118178IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001511.2E-5327418IPR019835SWIB domain
SuperFamilySSF475921.02E-21337414IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.3E-27338420IPR003121SWIB/MDM2 domain
PfamPF022011.3E-16340413IPR003121SWIB/MDM2 domain
PROSITE profilePS5136027.498475608IPR004343Plus-3 domain
SMARTSM007191.4E-45475585IPR004343Plus-3 domain
SuperFamilySSF1590421.44E-31476605IPR004343Plus-3 domain
PfamPF031261.1E-21480583IPR004343Plus-3 domain
SuperFamilySSF552771.12E-18851917IPR003169GYF domain
CDDcd000726.72E-18862919No hitNo description
PROSITE profilePS5082914.886862916IPR003169GYF domain
SMARTSM004445.5E-17863918IPR003169GYF domain
PfamPF022131.1E-12864908IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.6E-18864916IPR003169GYF domain
SuperFamilySSF902297.06E-613371361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.16913371362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1363 aa     Download sequence    Send to blast
MEGGAKQQEL PVSALYRPHL QQENPSFNSL QQTQALLCFN QCEPAHELDD SQLVGAPTVV  60
AGHAEMDVKQ DDPVAESETL TEVKVTDKNA GKRKRGRPPR GQAKPPPPKK KKDEEDVCFI  120
CFDGGDLVLC DRRGCPKAYH AACIKRDESF FRSRAKWNCG WHICSNCEKA AYYMCYTCTY  180
SLCKGCIKDA DILCVRGNKG FCTTCMRTVL LVEDNERGNK EMAQVDFDDK SSWEYLFKVY  240
WIYLKGKLSL TLEELTRAKN PWKGAGLMAR KGESSDELYD ANDDKGSSSD SSSGHQEANT  300
SKRRKTKKQP KFLNKDNSLN VGRSDDSKRT CLPEGTEWAS KELLELVGHM KNGDTSVLSQ  360
FDVQALLLEY IKRNNLRDPR RKSQIICDMR LRNLFGKARV GHFEMLKLLE SHFLIKEHSR  420
ADDIMRGGVV DTLASQVDAD ENNDYQLMII KDKKRKTRKK GDERGPQTNL DEYAAIDVHN  480
INLIYLRRIL MENLIEDVET FQAKVVGSIV RIRISGSDQK QDMYRLVQVV GTSKVDVPYK  540
IGKRTADVML EILNLNKKEV ISIDSISNQE FSEDECRRLR QSIKCGLVNR LTVGEIQEKA  600
MALQAVRVND WLETEILRLN HLRDRASEKG HRKEYPLVLY PNDTMEFLFN VFRMEAGAFN  660
DLGRRRLFDF WRGFGRKHGA ADEERRRAEF SVGGLGFRPR ECVEKLQLLN TPEERQRRFR  720
ETPEKQDVIP RFSGLSKKGR EPFSPRRGGD IPNDMGSRAL KNLVTTNERG RNKCTTFLPE  780
KEEGAAKAHE REKESSQNQG GDAYGSNCWE KPRNQVDPIG SVTGGCTNQA VVRSGLSSGV  840
ASETSTTTLS TGTVLSANNE NDKIWHYQDP AGKIQGPFGM VQLRKWSANG FFPPHLRIWR  900
MNEKQDDSIL LTDAMNLQYH KEPPLQNNSL LQSQQVRVVS KDRENNWDGG LNGSMNATWI  960
GNKLNEGPGN SNDATISNGN NELVKRDGWG SCSSSWSTPA DIMNSKEVEI GSFSQGWDSL  1020
KGNTVVQVNS GHSGQSPKEN CRPLSIISSS RYSSPTPMKP SVEEWDSTLA SVSSLKPTEV  1080
ASDHAATPTS ESVQLTHSSP PYPTPNASSW QPIDTGPTEI SSVTEASVSD LLAEVEAMES  1140
LDGLPSPTSV MKCSGELTQG SKNDCFNSVE GLSPTPDPAK NDALSSTGDF QLTSQSTMSA  1200
EPCGASHTDV LDPDKKSVGH SSSNDKVEVE KKPSDGSVNQ WEAGSDIQPP APSTDQCQKL  1260
QILGMAQGNA NVNWGTSTGN LAVWGGQSKY SGGRFSGPRD RVFQVGDSGF DRGRTSLNRQ  1320
STFGGAGGGG FSSRNPPKGQ RVCKFFESGH CKKGASCDYL HP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A1e-141111841181Histone-lysine N-methyltransferase NSD3
4gnd_C1e-141111841181Histone-lysine N-methyltransferase NSD3
4gne_A1e-141111841181Histone-lysine N-methyltransferase NSD3
4gnf_A1e-141111841181Histone-lysine N-methyltransferase NSD3
4gng_A1e-141111841181Histone-lysine N-methyltransferase NSD3
4gng_D1e-141111841181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192111RKRGRPPRGQAKPPPPKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.36910.0bud| flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, mostly in the vasculature and shoot apices of young seedlings. {ECO:0000269|PubMed:22940247}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4580800.0AM458080.2 Vitis vinifera contig VV78X108989.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649078.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
SwissprotQ9SIV50.0C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLF6GWQ10.0F6GWQ1_VITVI; Uncharacterized protein
STRINGVIT_04s0023g02950.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding