PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01018886001
Common NameVIT_04s0023g02410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 163aa    MW: 17555.2 Da    PI: 10.5091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01018886001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-0558951254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  GSVIVT01018886001 58 RKEKLGDRIAALQRLVAPF-----GKTDTASVLTEAIGYIQFL 95
                       7788899*********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3824695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1156109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-656100No hitNo description
Gene3DG3DSA:4.10.280.102.6E-857103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MQESSHNPSN SSKMTSAFMN GVSRTKVTRS RTAPKALHAA TKMSGFGPRS SYPPLKVRKE  60
KLGDRIAALQ RLVAPFGKTD TASVLTEAIG YIQFLHDQIQ TLSVPYMKSS QSKSLVPMQM  120
GSSDEDGKEG AKRDLRSRGL CLVPVSCTSY ITACSVGVWT PL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4845401e-65AM484540.2 Vitis vinifera contig VV78X150121.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649107.11e-114PREDICTED: transcription factor bHLH110
SwissprotQ9SFZ33e-42BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A438EUY31e-113A0A438EUY3_VITVI; Transcription factor bHLH110
TrEMBLD7SP791e-116D7SP79_VITVI; Uncharacterized protein
STRINGVIT_04s0023g02410.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]