PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019047001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 386aa    MW: 42551.3 Da    PI: 7.4009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019047001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.5e-1185134153
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                        s y+GV ++++ grW A+I  +     +k   lg+f t eeAa+ ++ a+ k+
  GSVIVT01019047001  85 SIYRGVIRHHQHGRWQARIGRVAG---NKDLDLGTFSTQEEAAEVYDIAAIKF 134
                        57****99999*******988532...5*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-685133IPR001471AP2/ERF domain
CDDcd000181.20E-1985146No hitNo description
SuperFamilySSF541718.5E-1585146IPR016177DNA-binding domain
PROSITE profilePS5103216.88486144IPR001471AP2/ERF domain
SMARTSM003803.5E-2486150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1486145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MRLIYGTTVA EEDKLEREGK EWLVEKEGSF MHFAFIILLS NLYFSSDFLT TTFGTTTTTN  60
FPVSFTFVSP FSGMLKSSGF SRGVSIYRGV IRHHQHGRWQ ARIGRVAGNK DLDLGTFSTQ  120
EEAAEVYDIA AIKFQHLNAV TNFDMSRYDV NSILESTHHH GVPTVAFQQA QPFSMHYPYG  180
HQQRAVWCKQ EQDPDATHSF QDLHQLQLGN TRNFFQPNVL HNLMSMDSSS MKHSSGSNSV  240
IYSGGGAADG SAATGGGSGS FQGVGYGSNI GFVMPISTVI AHESSHGQGN GSFGDSKVKA  300
IGYDNIFGST DPYHARSLYY LSQQSSAGMV KGSSAYDQGS GCTNWVPALV PLTTWQYAME  360
HLHSQYGMIH KAWKNGRRDQ IWGKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4557850.0AM455785.2 Vitis vinifera contig VV78X248841.23, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074893.11e-139PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A438CV880.0A0A438CV88_VITVI; AP2-like ethylene-responsive transcription factor PLT2
STRINGEOY097221e-122(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-40AINTEGUMENTA-like 5