PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019118001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 112aa    MW: 12572.4 Da    PI: 5.85
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019118001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.4e-124975127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C+++ rtG C++G +C+F+H+p
  GSVIVT01019118001 49 PGEPDCSYYIRTGLCRFGITCRFNHPP 75
                       5799*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.0E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9484876IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-45474IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEFDAGIPMP RGQVTEGSSL SPSLNQDAMW QMNLRSSETM ESGPYPERPG EPDCSYYIRT  60
GLCRFGITCR FNHPPNRKLA IATARMKGEF PERMGQPECQ ACVLFFIFFP L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.90251e-155bud| fruit| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4245643e-84AM424564.2 Vitis vinifera contig VV78X120340.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278934.26e-66PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ8GXX75e-47C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLF6GX271e-64F6GX27_VITVI; Uncharacterized protein
STRINGVIT_04s0023g00370.t012e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-49zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]