PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019293001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 211aa    MW: 24144.7 Da    PI: 9.6335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019293001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13871681498
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                 B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                        +++vlp k      +++   +   +   + ++We+++  ++  ++   +  GW+ Fv++n+Lk+gD +vF+l+  + s+ +++v+++r
  GSVIVT01019293001  87 NQMVLPTKMH---PSVPSA-VIPAVLVHQDKRWEMTF--NGDHRThKRFDIGWRTFVNDNNLKAGDACVFELMeCNtSNIKFRVQILR 168
                        5566666643...333322.22334455889******..666555467999********************88666688888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-1574168IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1574171IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1375168No hitNo description
SMARTSM010192.3E-777170IPR003340B3 DNA binding domain
PfamPF023623.4E-1086168IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448113170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKERKRGREQ LQQRNLEDRQ SNSRTLPETP HMDSLARNRS TKAENSKMEE SGGQTSEEPA  60
TKFQADEIHP LLGKPYFHVV LVKSHLNQMV LPTKMHPSVP SAVIPAVLVH QDKRWEMTFN  120
GDHRTHKRFD IGWRTFVNDN NLKAGDACVF ELMECNTSNI KFRVQILRGD IPSMLLDRAN  180
GETSDTAILK FVISFVLCKN VEKLKFVILF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.83940.0bud| fruit| inflorescence| pedicel| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4276281e-163AM427628.2 Vitis vinifera contig VV78X114147.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267731.11e-141PREDICTED: B3 domain-containing protein Os04g0386900
TrEMBLF6I5F31e-139F6I5F3_VITVI; Uncharacterized protein
STRINGVIT_15s0024g00930.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-09B3 family protein