PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019481001
Common NameLOC100257104, VIT_02s0025g01020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 399aa    MW: 43551.4 Da    PI: 6.5187
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019481001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16254316163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e++lkrerrkq NRe+A++sR+RK+ae eeL+ + ++L +eNkaLk e+++l+++ +k++ e+
  GSVIVT01019481001 254 ERQLKRERRKQANRESAKKSRLRKQAENEELRMRYETLNEENKALKFEISKLTEHLDKVRLEN 316
                        799*****************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.3E-30195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.9E-6114225No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-12251313No hitNo description
PfamPF001702.8E-15254316IPR004827Basic-leucine zipper domain
SMARTSM003382.4E-12254318IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.266256319IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-8257311No hitNo description
CDDcd147021.07E-17259310No hitNo description
PROSITE patternPS000360261276IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGKSEAEMSS KSDKISSSAE EQTNIHLLNP DWASIQAYYG SGVPLLAPHF NSAVPGSHFP  60
YPYVWAPSQP LIPPYGVPYT AIYSHEGVHA HPAVPLVATP LSKKAPSRSS VDMDQGVRKK  120
FKRLDGLAVP VGNVSTEDDA GGSVYEVSQS VKHGIDGSTD GSDGNTGAFL PQRNSGSEGI  180
LSTDNDGNFH RFAGSLSEGE AYAASHKVSV NSVAPTNVAG KSVRPLNRNE EIHAACVASS  240
TSAGSPFEVC QQDERQLKRE RRKQANRESA KKSRLRKQAE NEELRMRYET LNEENKALKF  300
EISKLTEHLD KVRLENTALR EKLKNKQQLE LQGEMAPYKI EADLILPDSP EEVYKLNDSN  360
SLNQNVQMEC GIQENPNSET KLHQLLKSNS RTDAIVAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.60130.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3969160.0FQ396916.1 Vitis vinifera clone SS0AEB8YG24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631394.10.0PREDICTED: common plant regulatory factor 1 isoform X3
TrEMBLD7TVB90.0D7TVB9_VITVI; Uncharacterized protein
STRINGVIT_02s0025g01020.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP43461123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.16e-54G-box binding factor 3