PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019630001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MIKC_MADS
Protein Properties Length: 597aa    MW: 68435.8 Da    PI: 7.0695
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019630001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.4e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ie+k+ rq+tfskRr+g+lKK +ELSvLCda++ +iifs+tgk++ey+s
  GSVIVT01019630001  9 KKIEDKTVRQITFSKRRAGLLKKTHELSVLCDAQIGLIIFSNTGKMFEYCS 59
                       68***********************************************96 PP
2K-box30.41.7e-11881441772
              K-box  17 lqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                           el+++++e++ Lq + q h    dL+s+ +++L++LeqqLe+s++k+R  Kn+ 
  GSVIVT01019630001  88 HIDELKRIRDETHHLQlTLQHHSTTHDLSSIRYEDLEELEQQLEHSMNKVRVLKNHT 144
                        4579************88889999***************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-30285IPR002100Transcription factor, MADS-box
CDDcd002657.37E-40276No hitNo description
PRINTSPR004046.1E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.15785215IPR002487Transcription factor, K-box
PfamPF014861.1E-890151IPR002487Transcription factor, K-box
Gene3DG3DSA:3.30.200.205.8E-25148262No hitNo description
SuperFamilySSF561124.59E-69153419IPR011009Protein kinase-like domain
CDDcd139831.78E-158160419No hitNo description
SMARTSM002201.5E-63162419IPR000719Protein kinase domain
PROSITE profilePS5001142.322162419IPR000719Protein kinase domain
PfamPF000699.6E-53165419IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.0E-48263438No hitNo description
PROSITE patternPS001080286298IPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:3.10.20.905.4E-12475534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0035556Biological Processintracellular signal transduction
GO:0046777Biological Processprotein autophosphorylation
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MGRGKITIKK IEDKTVRQIT FSKRRAGLLK KTHELSVLCD AQIGLIIFSN TGKMFEYCSN  60
SSRMEQIVER YQKAKGTFKH DNKLKIHHID ELKRIRDETH HLQLTLQHHS TTHDLSSIRY  120
EDLEELEQQL EHSMNKVRVL KNHTPLTDDS DFEEKDPTGR YVRYNEFLGK GAFKTVYKAF  180
DEVDGIEVAW GQVEIEDLLQ SPQQLERLYS EVHLLKSLKH DNIIKFYNSW VDDTNKTINL  240
ITELFTSGSL RQYRKKHKNV DLKAIKNWAK QILRGLHYLH SHNPPIIHRD LKCDNIFVNG  300
NNGEVKIGDL GLAIVMQQPT ARSVIGTPEF MAPELYEEEY NELVDIYSFG MCILELVTCE  360
YPYNECKNPA QIYKKVSSGI KPASLGKVSD PQVKQFIEKC LVPASLRLSA QELLKDAFFA  420
TENSKEPLSV STHKSMSTHM KSISGTPHFR ALQFERFNKN NLFKLRGEKI DDNSISMTLH  480
IADPCGRAKN IHFAFYLDSD TALSIAGEMV EQLDLYNEDV AVIAELIDVM ISELVPTWKP  540
AFESMLCILV IQVQLRVHQM QLLNILSHYT TVILVNLLIG LIIISDLLIL INDPLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5o2c_A1e-10615754122380Serine/threonine-protein kinase WNK3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.193750.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4757930.0AM475793.2 Vitis vinifera contig VV78X032299.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659888.10.0PREDICTED: probable serine/threonine-protein kinase WNK10 isoform X1
SwissprotQ6EU490.0WNK4_ORYSJ; Probable serine/threonine-protein kinase WNK4
TrEMBLF6HU640.0F6HU64_VITVI; Uncharacterized protein
STRINGVIT_02s0025g02360.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-31MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]