PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019699001
Common NameVIT_02s0025g03000
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 381aa    MW: 42797.2 Da    PI: 9.019
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019699001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.54.7e-32157261199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed+sg+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  GSVIVT01019699001 157 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRSGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGE 248
                        89***************************966667889*************************************************66577 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                          + +l++ ++r+
  GSVIVT01019699001 249 sGKDRLYIDWRRR 261
                        7888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-43146272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-30154262IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-26155251No hitNo description
PROSITE profilePS5086314.903157262IPR003340B3 DNA binding domain
PfamPF023621.8E-29157261IPR003340B3 DNA binding domain
SMARTSM010193.3E-23157262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MIGTSSHEPN QIIRGSLRRH PPRVRKITHI LLSSISLKIQ LKSEIMDLLP DRDVVCEQEQ  60
VIRGKQLPFS YSSSPSPSSS SSQYRNLVPL PNGGDRWDAQ IQRGWLGHQE DGMRCFEGGA  120
ASKLELMDTS PTNDEDDVVD DDVRRRDSQA LEREHMFDKV VTPSDVGKLN RLVIPKQHAE  180
KYFPLDSSAN EKGLLLNFED RSGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDIV  240
SFQRGVGESG KDRLYIDWRR RPDAPEPSSL AHHFFHRSPN YMSHLGGRNP YGSGAYSYNN  300
AVNPCSGSVF YLRPTAPQQV GMVQVQQGGV EPMVFNSVPV VHGKAAAKRL RLFGVNMECP  360
ISESDELSNK LSSLSTLLAT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-671522623114B3 domain-containing transcription factor NGA1
5os9_B6e-671522623114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4314160.0AM431416.2 Vitis vinifera contig VV78X105475.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019072394.10.0PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotO827993e-79NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLF6HU980.0F6HU98_VITVI; Uncharacterized protein
STRINGVIT_02s0025g03000.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-75B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]