PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019829001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 307aa    MW: 34172.2 Da    PI: 4.7702
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019829001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.6e-36251162102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F+kg+k l
  GSVIVT01019829001  25 FLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDYFRKGEKAL 107
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GSVIVT01019829001 108 LRDIQRRKI 116
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3822114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.48E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAPLPVEQTG ESLAGESQRS LPTPFLTKTY QLVDDPAVDD LISWNEDGST FIVWRPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDYF RKGEKALLRD IQRRKISPMA  120
AAAATTVTVA AVLPVVARAV SPTNSGDEQV LSSNSSPATI LEENERLRRE NSQLTQELTQ  180
LRGLCNNILA LMTNYAAGQI DAGGIPEGRP LDLLTERQLP VEAGQSGVKA EGDLSPRLFG  240
VSIGVKRVRR DEEEESEKEA QTQQQEVKSE PLDGSSDHHQ DPPWLELRND PVERGHDSGL  300
IPRLIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-252511720123Heat shock factor protein 1
5d5u_B5e-252511429129Heat shock factor protein 1
5d5v_B5e-252511429129Heat shock factor protein 1
5d5v_D5e-252511429129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.10360.0bud| cell culture| flower| fruit| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3803940.0FQ380394.1 Vitis vinifera clone SS0ACG65YA14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283139.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_010661169.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D34e-99HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A438JJM60.0A0A438JJM6_VITVI; Heat stress transcription factor B-2b
TrEMBLF6HUF80.0F6HUF8_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04170.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-88HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]