PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019860001
Common NameVIT_02s0025g04460
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 207aa    MW: 23257.2 Da    PI: 6.9395
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019860001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1751101155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr++   ++Wv+e+r+p   +k+ r++lg++ tae+Aa+a++ a+++++g
  GSVIVT01019860001  51 PVYRGVRRRN-GNKWVCELREP---NKKSRIWLGTYPTAEMAARAHDVAALAFRG 101
                        68*****887.9*********8...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1351101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3052111IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2152111IPR016177DNA-binding domain
PROSITE profilePS5103222.52452109IPR001471AP2/ERF domain
SMARTSM003803.6E-2852115IPR001471AP2/ERF domain
PRINTSPR003673.7E-85364IPR001471AP2/ERF domain
CDDcd000183.84E-2853111No hitNo description
PRINTSPR003673.7E-87591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MELKLFDTPE SSSASDWQTR RTIQSDEEVL LASDRPKKRA GRRKFKETRH PVYRGVRRRN  60
GNKWVCELRE PNKKSRIWLG TYPTAEMAAR AHDVAALAFR GRKACLNFAD SAWSLPVPVS  120
KDSMEIRRAA AAAAEAFRPQ EFQDHSSGDA RKESVEAAES LIFDTAGLLI TMAEEPLHSP  180
PPCLGDGFMW EDVELDADMS LWSYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.277020.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00002PBMTransfer from 475045Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3870230.0FQ387023.1 Vitis vinifera clone SS0AEB27YP02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276153.11e-134PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ62e-65DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLF6HUI01e-134F6HUI0_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04460.t011e-135(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.26e-64ERF family protein