PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019876001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 432aa    MW: 46746 Da    PI: 7.9585
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019876001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.23.6e-35181272296
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsss 87 
                         g++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++      +       +s  ss
  GSVIVT01019876001 181 SGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlK-----IPTS--SS 265
                        5899************************************************************998885553222210.....1111..11 PP

                TCP  88 gkaaksaak 96 
                        +  +++ + 
  GSVIVT01019876001 266 S--NPEGEA 272
                        1..111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-29186272IPR005333Transcription factor, TCP
PROSITE profilePS5136926.003187241IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MKNLFQTFSD TTRVAHWLRV ETTYHLWGGP LKTTHDKPIG GPRVGPNTCP YPIHRLTLLI  60
HSPPEKRSSV FSRTKQYFGS LFCGMASLQE HEIDQDDEVG TSDLSSSAGE PEEENNANDN  120
GMSKPSSSDQ TTTFQALSMK EEPVDSEPDA EQKPQAPSIG VVPVIQMQMP MPIPMPMPVS  180
SGRRSSTKDR HTKVEGRGRR IRIPATCAAR IFQLTRELGH KSDGETVRWL LEHAEQAIIE  240
ATGTGTVPAI AVSVGGTLKI PTSSSSNPEG EAPKKRKRPA NSEFYDVNDG VSVSSGLAPV  300
GATAVAAAAP QGLVPIWAVG NAGMMIPPNA PQLWTISPSV SPVFNMSARP ISSFSTMAPC  360
VSSTTTTTNT SATKPQMLRD FSLEIYDKKE LQFMGRSGNQ QTQSSKIFVL PCNIHHSSTI  420
KPIFSVYFIV L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278PKKRKRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13170.0flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4664170.0AM466417.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X250724.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282409.10.0PREDICTED: transcription factor TCP9
RefseqXP_010661412.10.0PREDICTED: transcription factor TCP9
TrEMBLF6HUI60.0F6HUI6_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04590.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-60TCP family protein