PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019913001
Common NameVIT_02s0025g04910
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 213aa    MW: 23315.7 Da    PI: 9.2642
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC811.1e-25110154145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  GSVIVT01019913001 110 DPEPGRCRRTDGKKWRCSKEAVPDQKYCERHMHRGRQRSRKHVEA 154
                        79*****************************************97 PP
2QLQ52.61.4e-184175337
                QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       FT  Qlq+L++Q+l+yKy+ a++PvP +L+ +i+k
  GSVIVT01019913001 41 FTFLQLQELEHQALIYKYMEAGLPVPYHLVYPIWK 75
                       9999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-63975IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9274075IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-144174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847110154IPR014977WRC domain
PfamPF088791.5E-21111153IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSHNPPSKI ARLSGSPPIG LGLELGRGSG DMLGCTKSCG FTFLQLQELE HQALIYKYME  60
AGLPVPYHLV YPIWKSVACS LVGLTAGAYQ HHPGFLGLSP LYLDYKNSMD PEPGRCRRTD  120
GKKWRCSKEA VPDQKYCERH MHRGRQRSRK HVEASQLGAR TATSALNNTV RDAVTSNTNL  180
SISLPVSSTT NDISPKSVLQ LEKVRCCASF AP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.54820.0bud| inflorescence
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4497051e-177AM449705.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X253597.8, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281639.11e-150PREDICTED: growth-regulating factor 10
SwissprotQ6EPP92e-47GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A438K2P41e-148A0A438K2P4_VITVI; Growth-regulating factor 10
TrEMBLF6HUK81e-148F6HUK8_VITVI; Uncharacterized protein
STRINGVIT_02s0025g04910.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.14e-37growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]